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Lab on a Chip

● Royal Society of Chemistry (RSC)

Preprints posted in the last 90 days, ranked by how well they match Lab on a Chip's content profile, based on 96 papers previously published here. The average preprint has a 0.07% match score for this journal, so anything above that is already an above-average fit.

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Computationally guided design of a metastasis-on-a-chip platform for quantitative evaluation of chemotactic cues in developmental cancers

Murphy, C.; Jarc, L.; Cadavere, A.; Cioffi, E.; Badiola-Mateos, M.; Fernandez, D.; Gomez-Jimenez, N.; Mora, J.; Samitier, J.; Villasante, A.

2026-07-27 bioengineering 10.64898/2026.07.25.740695 medRxiv
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Metastatic dissemination is initiated by tumor cells interpreting spatially organized biochemical and biophysical cues that remain difficult to reproduce using conventional migration assays. Here, we developed a computationally guided metastasis-on-a-chip (MET-on-a-chip) platform based on the concept of the Minimally Functional Unit (MFU), in which only the biological components required to answer a defined experimental question are incorporated. The platform consists of two independent culture chambers connected through an array of confined microchannels that permits diffusion of soluble factors while constraining tumor cell migration. Rather than relying on empirical optimization, finite-element COMSOL simulations were first used to predict molecular transport, define growth factor loading conditions, identify biologically relevant exposure regions, and guide the rational design of the microfluidic assay. Computational predictions were experimentally validated using 70-kDa FITC-dextran diffusion and VEGF release studies, confirming the formation of stable spatial concentration gradients across the microfluidic platform. The simulations further demonstrated that both growth factor loading and cell positioning relative to the predicted gradients critically influenced assay performance, leading to the optimization of the platform through spatial reconfiguration of the tumor compartment. Using the optimized configuration, we compared the migratory responses of neuroblastoma, Ewing sarcoma, and osteosarcoma cells to vascular (VEGF-A165) and lymphatic (VEGF-C) chemotactic cues. VEGF-C significantly increased migration through the microchannel array in Ewing sarcoma and osteosarcoma cells, whereas VEGF-A165 produced no significant effect. In contrast, neuroblastoma cells exhibited minimal migration under either condition, revealing tumor-specific differences in responsiveness to VEGF signaling. Together, these findings establish a computationally guided workflow for the rational design of metastasis-on-a-chip assays, in which predictive modeling informs experimental design before biological validation. By substantially reducing empirical trial-and-error while enabling quantitative control over growth factor exposure, this strategy provides a robust framework for developing minimally functional microphysiological systems capable of dissecting individual steps of the metastatic cascade under experimentally defined conditions. Translational Impact StatementMetastatic dissemination remains one of the greatest clinical challenges in pediatric oncology, yet experimental models capable of quantitatively evaluating early migratory events remain limited. The computationally guided MET-on-a-Chip workflow presented here provides a human-relevant platform in which soluble microenvironmental cues can be systematically investigated under controlled and predictive conditions. Although demonstrated here using VEGF-A165 and VEGF-C, the platform can be readily adapted to study virtually any chemotactic factor, cytokine, extracellular vesicle population, or therapeutic candidate involved in metastatic dissemination. The modular MFU design allows biological complexity to be incorporated progressively as dictated by the scientific question, providing a flexible framework for future applications. In the longer term, this workflow could be combined with patient-derived tumor cells, organoids, or biopsy material to investigate patient-specific metastatic behavior and evaluate anti-metastatic therapeutic strategies in a personalized setting. Beyond identifying pro-migratory signaling pathways, the platform may serve as a preclinical tool to prioritize compounds capable of preventing tumor cell dissemination before evaluation in more complex animal models or clinical studies.

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Quantifying Assay Confidence in Barrier Organ-on-Chip Systems: A Monte Carlo Assay-Readiness Framework for Detecting Modest Permeability Shifts

Dama, P.; Sahare, S.

2026-09-28 bioengineering 10.64898/2026.09.26.754630 medRxiv
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Organ-on-chip (OoC) systems are increasingly used to generate human-relevant evidence in drug discovery and preclinical development, yet interpretation can be limited by the interaction of biological variability, device-to-device variability, and technical assay noise. Here, we describe the UstarFlowAI barrier-confidence framework, an in silico assay-readiness approach that quantifies whether a predefined permeability-related effect is resolvable under specified uncertainty. The proposed context of use is decision support for laminar, low-Reynolds-number airway epithelial monolayer barrier OoC assays in which device fabrication, pump performance, flow, wall shear stress, and biological fluctuation may affect permeability-related readouts. Monte Carlo simulations propagate defined manufacturing, biological, systemic, and well-level uncertainty and estimate the minimum detectable shift (MDS) under a prespecified decision rule. In the present proof-of-concept design, the reference workflow was parameterized at 9.4% technical coefficient of variation (CV), whereas the standardized workflow was parameterized at 5.0% CV, corresponding to an approximately 46.8% reduction in the modeled technical-noise component. At n = 48 replicate wells per group and a nominal total assay-noise operating point of 17% CV, a predefined 10% permeability shift exceeded the upper MDS uncertainty bound for the standardized workflow in both best- and worst-case scenarios, whereas it overlapped the 95% MDS interval for the reference workflow and therefore did not meet the prespecified PASS criterion. These findings demonstrate the behavior of the computational framework under the stated assumptions; they do not constitute experimental validation, regulatory qualification, or evidence that a 10% shift is universally meaningful across barrier OoC systems. We therefore propose a prospective wet-lab validation strategy in which model predictions are tested against airway barrier measurements generated under controlled sources of technical and biological variability. The framework is intended to complement, rather than replace, the underlying biological model by making assay uncertainty and decision thresholds explicit and auditable.

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A PDMS-based microfluidic platform enabling dual biochemical and electric-field stimulation for modeling sensory neuron-intervertebral disc crosstalk

Akande, O. I.; Clayton, S. W.; Jing, L.; Duong, D.; Stottlemire, B.; Potter, R.; Hashemi, M.; Liefer, A.; Huebsch, N.; Setton, L.; Tang, S. Y.; Berkland, C.

2026-07-30 bioengineering 10.64898/2026.07.29.741573 medRxiv
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Inflammation-driven increases in nociception are prominent in pain pathologies associated with intervertebral disc (IVD) degeneration yet are difficult to model in vitro. Since neurons are exposed to multi-modal stimuli in vivo, it is critical for these exposures to be conserved in an in vitro test system. We developed a polydimethylsiloxane (PDMS)-based microfluidic platform to interrogate peripheral sensory neurons (SNs) in the presence of conditioned media from nucleus pulposus cells from the degenerated IVD, to model a potential impact of IVD cells secretome on pain sensing. Our platform enables controlled perfusion of cell-derived biochemical cues alongside a defined homogeneous electric field (EF) and supports real-time optical analysis. Computational modeling, fluid perfusion experiments, and conductivity measurements confirmed stable fluid transport and tunable homogeneous EF generation within the device. As proof of concept for neuronal stimulation, neuroblastoma (N2a) cells loaded with a fluorescent Ca2+ indicator exhibited a 56% increase in Ca2+ transient activity when exposed to media from degenerated IVDs, concomitant with increased IVD-derived IL-1{beta} production. Importantly, EF-stimulated Ca2+ transients increased in SNs derived from human induced pluripotent stem cells when exposed to conditioned media from primary human IVD cells, demonstrating the translation of this model system to human cells. Together, these results establish a versatile platform that enables controlled and simultaneous exposure to biochemical and electrical stimuli to quantify inflammation-driven peripheral neuronal hyperexcitability in tissue-neuron crosstalk.

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A Versatile Microfluidic Device for High-throughput Combinatorial Drug Screening

Jaiswal, S.; Reddy, M. P.; Paul, D.; Gandhi, P.; Majumder, A.

2026-09-10 cancer biology 10.64898/2026.09.09.750366 medRxiv
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Combination therapies can improve anticancer efficacy, but identifying effective drug pairs and dose combinations requires systematic exploration of multidimensional concentration spaces. Here, we extend a diffusion-driven, flowless microfluidic concentration gradient generator (CGG) to enable quantitative combinatorial drug screening without external pumps or continuous flow. The platform comprises a 5 x 5 array of interconnected culture nodes coupled to four peripheral reservoirs, in which overlapping diffusion fields generate spatially defined single- and multidrug exposures. Computational modelling was used to assign local drug concentrations to individual nodes, enabling direct correlation of the predicted exposure landscape with cellular response. Using MCF-7 breast cancer cells and 5-fluorouracil (5-FU) and doxorubicin (DOX) as model therapeutics, the platform resolved concentration-dependent single-agent responses, yielding IC50 values of 3.46 M for 5-FU and 1.22 M for DOX. Combinatorial loading generated 25 spatially defined 5-FU-DOX concentration pairs within a single device, which were resolved into two-dimensional concentration-response landscapes. Bliss independence analysis revealed concentration-specific drug interactions, with synergy predominating at low-to-intermediate concentrations and a transition towards additive and antagonistic responses at higher exposures. These findings establish a pump-free microfluidic strategy that integrates computational concentration mapping with spatially resolved pharmacological analysis to identify effective drug-combination windows within a single platform.

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Dissecting Immune-Epithelial Interactions in Airway Infection at Single-Cell Resolution Using a Compartmentalised Microfluidic Device

Young, L.-M. G.; Tostado, C. P.; Koh Kok, J.-Y.; Amaya Catano, J.; DasGupta, R.; Spann, K. M.; Toh, Y.-C.

2026-08-25 bioengineering 10.64898/2026.08.24.746128 medRxiv
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Immune-epithelial interactions govern the initiation and progression of airway diseases, yet their heterogeneity is difficult to capture using existing in vitro models. Although conventional Transwell and lung-on-chip systems reproduce airway compartmentalisation and permit epithelial-immune interactions, they lack the spatial and analytical resolution needed to visualise dynamic immune behaviour during infection. Here, we present the "Single Cell resolved Airway-Immune Recruitment" (scAIR) platform designed to interrogate immune-epithelial interactions during airway infection. The scAIR device features a modular central chamber accommodating a Transwell insert with primary airway epithelial cells (AECs) pre-differentiated under air-liquid interface (ALI), flanked by immune compartments connected through a precision-patterned microchannel array. This architecture enables real-time single-cell imaging of immune cell migration while preserving epithelial physiology. The scAIR device coupled with a machine learning analysis (MLA) pipeline enables automated tracking and quantification of individual immune cell speed, direction, and behavioural heterogeneity. Using this platform, respiratory syncytial virus (RSV) infection is modelled to generate a type 1 inflammatory airway epithelium that drives neutrophil recruitment. TNF-alpha neutralisation with adalimumab reveals distinct migratory behaviours that are obscured by population-averaged measurements. This integrated platform quantifies airway immune responses during infection and therapeutic modulation, enabling mechanistic studies, drug evaluation, and precision modelling of airway inflammation.

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A Compact, Standalone & Battery-Powered 3D Organoid-on-Chip System with Programmable Flow Control

Thakur, R.; Murthy, V.; Olsen, S.; Wolcott, E.; Budkina, D.; Anderson, F.; Zheng, T.; Wright, A.; Copperman, J.; Bertassoni, L. E.; Langer, E. M.; Davies, A. E.

2026-08-04 bioengineering 10.64898/2026.08.02.742326 medRxiv
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Organoids-on-chip combine the 3D complex microenvironment and cellular composition of organoids with microfluidic flow, increasing nutrient-waste exchange and mimicking the contributions of in vivo interstitial and vascular flow. However, the widespread adoption of organoid-on-chip platforms is limited by the lack of incubator-friendly flow control systems. Existing approaches often rely on commercially available syringe or peristaltic pumps, but these are bulky, lack scalability, and present a significant barrier for clinical translation. To circumvent these issues, we present the Compact Active Perfusion Standalone Organoid-on-Chip (CAPS-OC) platform, a fully integrated and battery-powered microfluidic system capable of culturing organoids in active media flow. To achieve this, we introduce a novel low-power mechanism of pressure pulse generation using an off-the-shelf compact rotary actuator (CRA), and package it into a compact electromechanical assembly. This assembly provides timed pneumatic inputs to achieve programmable control of membrane-based peristaltic pumps, with [~]100 {micro}L/hr dynamic range achieved on a custom microfluidic organoid chip. We biologically validated this system by culturing pancreatic cancer organoids derived from a KrasLSL-G12D/+; Trp53LSL-R172H/WT; Pdx1-Cre (KPC) genetically engineered mouse model. We found that our chip enhances proliferation and helps sustain a population of larger (>150 {micro}m) organoids compared to standard dome based static culture. Additionally, through immunostaining, we observe that KPC organoids cultured in the chip show more aggressive PDAC phenotype with reduced nuclear expression of GATA6, whereas organoids in static culture retain less aggressive classical- like subtype. Finally, testing of a RAS inhibitor drug, daraxonrasib, on the KPC organoids on chip showed size-based sensitivity elucidating the impact of active perfusion on the drug diffusion kinetics. Altogether, we establish CAPS-OC as a valuable tool for the bioengineering community and for clinically translating organoid model systems.

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Label-free Isolation of Heterogeneous Breast Cancer Cell Populations via Insulator-Based Dielectrophoresis

Ozkayar, G.; Usman, I. N.; Yakin, E.; Kraan, J.; David, K.; Bosma, D.; Martens, J. W.; ten Dijke, P.; Pesch, G. R.; Boukany, P. E.

2026-08-10 cancer biology 10.64898/2026.08.04.742571 medRxiv
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Circulating tumor cells (CTCs) are valuable biomarkers for cancer diagnosis and monitoring, yet their isolation from blood remains challenging due to their phenotypic heterogeneity and rarity. Label-free microfluidic technologies offer a promising alternative to affinity-based approaches by exploiting intrinsic biophysical differences between cell types. Here, we developed a microfluidic platform for label-free cell separation based on insulator-based dielectrophoresis (iDEP). The microfluidic device employs an array of triangular insulating structures that generate strong electric field gradients in response to an externally applied alternating current (AC) electric field, enabling selective isolation of breast cancer cells from blood cells based on their dielectric properties. Hydrodynamic focusing is used to confine the sample stream and precisely control cell trajectories within the separation region. Numerical simulations were performed to optimize the electric field distribution and fluid flow characteristics within the device. Experimental validation using breast cancer cell lines (mesenchymal-like MDA-MB-231 cells and epithelial-like MCF-7 cells) spiked into peripheral blood mononuclear cells (PBMCs) demonstrates selective dielectrophoretic deflection of cancer cells while PBMCs largely follow the central streamline. The platform achieves recovery rates exceeding 98% and a separation purity above 65% within the optimized operating conditions. The proposed system provides a simple label-free approach to separate heterogeneous cell populations and represents a promising tool for microfluidic liquid biopsy enrichment applications.

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Microfluidic Devices for Imaging and Biochemistry Analysis of Microbes Under Mechanical Pressure

Kim, H.; Nguyen, N.; Alric, B.; Albert, L.; Delarue, M.

2026-09-10 biophysics 10.64898/2026.09.06.749717 medRxiv
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Growth-induced pressure arises when proliferating cell populations are confined within rigid microenvironments and is increasingly recognized as a determinant of microbial physiology in soils, biofilms, and host tissues. We present two complementary microfluidic devices that confine microbes within polydimethylsiloxane (PDMS) chambers and apply defined, optically read-out growth-induced pressure of up to 1.5 MPa. The first, the self-closing (SC) chip, confines cells in multiple small chambers accommodating hundreds of cells; it provides excellent nutrient supply and rapid medium exchange, supports single-cell imaging, and allows multiplexing of cellular or chemical conditions. The second, the pressure-recovery (PR) chip, confines cells in a single 5 cm-long chamber accommodating hundreds of thousands of cells; a scalpel-cut step recovers live cells from the channel within minutes for bulk biochemical assays. The two devices share a single two-layer soft-lithography fabrication process and a common brightfield wall-displacement pressure readout. Together, they enable single-cell imaging and bulk biochemical analysis under matched, defined pressure conditions. We illustrate the protocol with two representative validations: rapid {beta}-estradiol-induced transcription in the SC chip, in which nascent transcription foci appear within 5 min independently of the applied pressure, and the PR chip, which produces uniform growth-induced pressure along the entire 5 cm channel and recovers between 0.1x10^6 and 1x10^6 cells per device in a pressure-tunable manner.

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Spatially distributed growth factor environments for evaluating hydrogel-based CD34+ cell culture conditions

Murphy, A. R.; Franco, R. A.; Johnson, P.; Cooper-White, J. J.; Allenby, M. C.

2026-09-17 bioengineering 10.64898/2026.09.15.751891 medRxiv
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Suspension culture is the gold standard for ex vivo hematopoietic stem cell (HSC) expansion; however, high media requirement results in expensive cell therapy products. Hydrogel-based HSC culture represents a more realistic in vitro representation of human in vivo HSC microenvironments and may support a more efficient use of media during ex vivo HSC expansion. However, media conditions used for hydrogel-supported cell culture often simply mimic that which are currently used in suspension culture approaches, potentially resulting in an oversupply of cell growth proteins. In this work, we present a microfluidic culture system capable of supporting hydrogel-based cell culture and generating spatial distributions of independent growth factor combinations. Using this device, we image, in real-time, the behaviour of human umbilical cord blood-derived CD34+ cells, within fibrin-based hydrogels, in response to spatial gradients of the human recombinant growth factors stem cell factor, thrombopoietin, angiopoietin-2 and insulin-like growth factor-II. Using live microscopy and image-based single-cell segmentation and quantification, local changes in cell density over time in relation to spatial concentration of factors were identified. This novel microfluidic device has the potential to screen combinations of growth factors required for hydrogel-supported CD34+ cell expansion and inform culture media formulations of future hydrogel-based cell manufacturing processes.

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Endothelium-on-a-chip for permeability studies in diabetic and diabetic kidney disease milieu

Telle, V.; de Haan, P.; Grajewski, M.; Mulder, P. P. M. F. A.; Mulder, J.-P. S. H.; Lambers-Heerspink, H. J.; Verpoorte, E. M. J.

2026-09-22 bioengineering 10.64898/2026.09.18.752765 medRxiv
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Organ-on-a-chip (OOC) technology is a valuable tool that can facilitate a faithful replication of target tissues or organs by enabling the application of important physiological cues that cells experience in their native environment. We describe here an endothelium-on-a-chip that was developed for studying endothelial barrier permeability in diabetic and diabetic kidney disease (DKD) milieu under physiologically relevant shear stress. The fluorescently labelled macromolecular tracer flux assay was applied to obtain apparent permeability (Papp) values. We demonstrated the protective effect of shear stress in our EoaC in diabetic and DKD milieu by testing endogenous diabetic and DKD factors individually (hyperglycaemia, pro inflammatory factor TNF[a], and hypertension-related hormone aldosterone) and in combination (aldosterone in hyperglycaemia, as well as a DKD mix consisting of TNF[a] and aldosterone in hyperglycaemia). To assess the applicability of our microfluidic EoaC for drug testing, we added the mineralocorticoid receptor antagonist, finerenone, and observed a statistically significant protective effect of this pharmaceutical on endothelial barrier integrity in DKD milieu in our model system. We conclude that this EoaC can be applied for endothelial barrier permeability evaluation not only in diabetic and DKD milieu, but in various pathophysiological situations. Moreover, it has shown a potential to be used in drug testing targeted to improve endothelial barrier resilience.

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Post-Assay Photogelation Enables Flow-Cytometric Sorting and Recovery of Bacterial Cocultures from Microfluidic Droplets

Alshareedah, I.; Green, K. M.; Shin, S.-M.; Jha, R. K.; Kumar, A.

2026-08-27 microbiology 10.64898/2026.08.27.747404 medRxiv
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High-throughput droplet microfluidics can compartmentalize bacterial interactions, but recovering droplets displaying phenotypes of interest often requires custom fluorescence-activated droplet-sorting instrumentation. Here, we introduce post-assay photogelation to decouple the material requirements of bacterial coculture from those of commercial flow sorting. Bacteria are cocultured in initially aqueous water-in-oil droplets containing photoreactive polymer precursors. After interaction phenotypes develop, ultraviolet exposure converts the droplets into mechanically stable hydrogel particles that can be transferred to an aqueous carrier and sorted using a commercial benchtop cell sorter. The sorted particles can subsequently be degraded enzymatically to release the encapsulated bacteria. We show that the timing of gelation alters bacterial growth and spatial distribution within droplets, with post-assay gelation supporting greater and more uniformly distributed growth than culture in preformed hydrogels. Using two fluorescent bead-encoded hydrogel-particle populations, we demonstrate sorting to greater than 99% purity. As an end-to-end demonstration, we cocultured sfGFP-expressing Escherichia coli Nissle 1917 with a cultured human nasal bacterial community and found that E. coli Nissle became the predominant detectable population under the tested conditions with possible inhibition of the cultured nasal bacteriome. This liquid-to-solid transition provides an accessible interface between aqueous bacterial droplet assays, commercial particle sorting, and downstream microbial analysis.

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Investigating the Role of Different Co-receptors on T-cell Activation Through IFN-γ Secretion Using Spatially Controlled Cell Monitoring Platform

Lartitegui-Meneses, N.; Azuaje-Hualde, E. A.; Merino, A.; Lopez-de-Lacalle, S.; Benito-Lopez, F.; Colom, A.; BASABE-DESMONTS, L.

2026-09-10 cell biology 10.64898/2026.09.07.749865 medRxiv
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Conventional methods for studying T-cell activation typically assess receptor engagement and downstream functional outputs in separate experimental formats, thereby obscuring the spatial correlation between initial receptor arrangement and localized functional outputs. This makes it difficult to examine the individual and combined effects of receptors and co-receptors engagement within the immunological synapse within the same controlled cellular microenvironment. Building upon the recently published CellStudio platform, previously validated for monitoring growth factor interactions in adherent cell models like mesenchymal stem cells and HeLa cells, we adapted this modular system to investigate non-adherent immune cells. This platform integrates Printing and Vacuum Lithography (PnVlitho) with bead-based immunoassays to generate defined activation patterns surrounded by cytokine capture antibodies, establishing a "present-and-measure" framework for localized biosensing. Jurkat T-cells were patterned on fibronectin alone or in combination with anti-CD3 and/or anti-CD4 antibodies, enabling precise engagement and activation of the co-receptors. Cell capture, basal contact morphology, and IFN-{gamma} secretion were evaluated for each condition. While CD4 engagement alone had a minimal effect, presenting anti-CD3 and anti-CD4 together caused the cells to spread into wide, circular contact zones and trigger the strongest local IFN-{gamma} signals. These findings show that first adaptation of CellStudio for suspension cells enables the standardized comparison of receptor-dependent differences in Jurkat-cell capture, contact morphology, and local cytokine-associated signals within a spatially defined assay, emerging as a powerful tool for understanding co-receptor cooperation in T-cell function and immunotherapy.

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Passive Cell-Flux Partitioning Enables Single-Cell-Constrained Impedance Sensing From High-Density Microbial Cultures

Alsadoun, W.; Pungan, L.; Patel, Y. H.; Robayo Yepes, J. J.; Yang, Y.; Yazicigil, R. T.; Jimenez, M.

2026-10-02 bioengineering 10.64898/2026.09.30.755765 medRxiv
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Fermentation is a process through which microorganisms are used to transform basic molecules into high value substances in various applications such as biopharma, food production, and biofuel generation. In such processes, monitoring the health of microbial cells is essential, as it is a key factor in the final product yield. Traditional methods of assessing the health of fermenter populations have involved manually extracting samples from the fermenter for benchtop testing, which lacked the accuracy and efficacy of real-time continuous measurements. This has opened the door for inline sensors to be integrated into fermenters for continuous measurement; including microfluidic based Electrochemical Impedance Spectroscopy (EIS). EIS utilizes a range of frequencies to gain insight into the characteristics of microbial populations, such as cell size and membrane capacitance. EIS cytometry, in particular, has emerged as a relevant tool, as it enables single-cell level detection in real-time. However, current EIS cytometry devices cannot be deployed directly within fermenters due to the high cell density conditions. This has limited EIS analysis in fermenters to bulk measurements averaged across a population. Here, we present a microfluidic chip that uses passive cell-flux-partitioning geometry to direct cells from high-density culture through a single-cell-constrained flow path containing integrated impedance-sensing electrodes. The proposed chip combines geometric channel design and embedded electrodes to enable continuous impedance measurements from cell-containing flow while operating at input cell densities on the scale of 10^9 CFU/mL. This work demonstrates a first step toward integrating single-cell-constrained microfluidic handling with impedance sensing for inline monitoring in industrial biomanufacturing.

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Using a 3-step semi-automated image analysis pipeline to quantify differences in VE-cadherin junction morphology in lymphatic endothelial cells in vitro

Larson, S. M.; Feller, A. K.; Whittington, C. F.

2026-10-06 bioengineering 10.64898/2026.10.05.756815 medRxiv
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Lymphatic endothelial cell (LEC) function is strongly tied to transitions between button- and zipper-like junctions that control fluid flow into vessels. Published methods quantifying junction morphology are limited to single cell analysis or use few quantitative metrics to describe junctions across LEC monolayers. Therefore, a novel 3-step image analysis pipeline was developed to identify new metrics that quantify differences in button- and zipper-like junctions in LECs. The pipeline used Cellpose, CellProfiler, and Fiji to analyze VE-cadherin expression across lymphatic vessels within a 3D microfluidic chip and quantify VE-cadherin radial intensity, number of objects, object size, branchpoints, end-points, and junction thickness. Tumor necrosis factor (TNF)- exposure produced but-ton-like junctions, and unexposed cells were zippered. Radial intensity was heightened at the cell membrane in zipper-like junctions while perinuclear intensity increased for but-ton-like junctions. Increased branchpoints, endpoints, objects per cell, and junction thick-ness were associated with junction buttoning, while increased object size was associated with junction zippering. Principle component analysis results reinforced these trends and identified metric combinations that represented each junctional state. Overall, this semi-automated pipeline quantified differences in VE-cadherin junction morphology across LEC monolayers and generated new quantitative metrics to expand the tools available for studying junction morphology in lymphatic vasculature.

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Microfluidic T-Chip enables one-step clinical-scale T-cell purification from blood products for CAR T-cell manufacturing

Rana, M.; Nigrovic, S. E.; Payan-Medina, A.; Saha, S.; Putaturo, V. R.; Cunneely, Q. E.; Bell, R.; Antmen, E.; Maus, M. V.; Toner, M.; Elsallab, M.; Mishra, A.

2026-07-31 bioengineering 10.64898/2026.07.30.741793 medRxiv
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Treatment with chimeric antigen receptor (CAR) T cells has emerged as a promising immune therapy for relapsed and refractory hematologic malignancies. The CAR T cells are manufactured in a series of steps that involve isolating T cells from the patients leukapheresis product, genetically modifying them to express the CAR against the target antigen, and reinfusing them into the patient. Efficient T-cell enrichment from leukapheresis products is critical to the success of these therapies. Current methods for T-cell sorting on a clinical scale involve several washing steps to remove red blood cells and platelets, followed by T-cell selection and activation. These multi-step processes result in cell loss during processing and involve several handling steps. Here, we utilize fluidically assembled micromagnetic lenses to develop a high-throughput, continuous-flow microfluidic T-cell sorter, designated as the T-Chip, for sorting magnetic bead-labeled CD3+ T cells in a single step. Our approach allows direct sorting of T cells in expansion media from leukopaks without any washing steps, effectively removing 99.999% of RBCs and platelets from the leukapheresis product. A single 1-inch x 3-inch T-Chip can process leukapheresis product at a throughput of 60 mL/hr and 2.56 {+/-} 0.12 billion cells/hr. Using this optimized workflow, we demonstrate clinical-scale enrichment of highly pure CD3+ T cells (97.7 {+/-} 1.3%) with high viability (97.0 {+/-} 1.1%) and recovery (87.3 {+/-} 14.8%) in a functionally closed manner. Downstream processing of T cells isolated using the T-Chip yielded potent anti-mesothelin CAR T cells with demonstrated anti-tumor efficacy. Overall, by exploiting precisely engineered magnetic forces and laminar flow, the microfluidic T-Chip overcomes bottlenecks caused by low throughput and enables single-step large-scale T-cell purification for the rapid development of CAR T cells.

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Multilayer-assembled microfluidic chip with Tesla-valve channels: Combined biochemical gradient and mechanical stiffness interface for 3D SKOV3 cell culture

Zhu, X.; Qian, W.; Cheng, H.

2026-09-17 bioengineering 10.64898/2026.09.15.751867 medRxiv
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Biochemical gradients and mechanical microenvironments synergistically regulate tumor cell proliferation, migration, and phenotypic evolution, which are critical for recapitulating in vitro tumor physiological microenvironments. In this work, a multilayer-assembled microfluidic chip integrated with Tesla-valve flow channels was developed for 3D SKOV3 cell culture under combined biochemical gradients and mechanical stiffness interfaces. The reconfigurable multilayer PMMA structure enables flexible construction of diverse concentration gradient fields, while the embedded Tesla-valve geometry effectively stabilizes fluid flow, reduces flow velocity fluctuation, and generates smoother, more stable biochemical gradients compared with conventional curved channel designs. Multiphysics simulations were performed to systematically verify the flow field distribution and gradient formation performance of the optimized channel structure. Furthermore, by constructing heterogeneous hydrogel microenvironments consisting of rigid Pluronic F127 and soft dextran hydrogel inside microfluidic chambers, stable mechanical stiffness interfaces were successfully fabricated. Combined with TGF {beta}1 biochemical stimulation, the platform was applied to explore the durotactic migration and morphological changes of 3D-cultured SKOV3 cells at stiffness interfaces. Fluorescence staining results demonstrated that mechanical boundary conditions significantly affected cell migration behavior and cell aggregation phenotypes under consistent biochemical induction. With the advantages of low cost, simple assembly, good biocompatibility, and controllable dual physicochemical microenvironments, this multilayer microfluidic platform provides a reliable and efficient strategy for in vitro tumor microenvironment simulation and tumor cell mechanobiology research.

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A novel in vitro assay for quantifying endothelial cell and pericyte interactions

Csordas, D. J.; Cucuzzella, L. C.; Kim, J. S.; Peirce, S. M.

2026-08-04 bioengineering 10.64898/2026.08.03.742618 medRxiv
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ObjectiveStructural adaptations of capillary networks, through angiogenesis, arterialization, and regression, are implicated in many diseases, and gaining a better understanding of the cell-cell interactions that underpin these adaptations may lead to novel therapeutic discoveries for disease management. Endothelial cells and pericytes are the two cell types that comprise capillary networks. Experimental model systems have been developed to study the dynamic interactions between endothelial cells and pericytes, providing valuable insights into capillary development, cell-to-cell communication, and responses to growth factors and therapeutic agents. MethodsIn this study, we present a novel and simple co-culture system that uses commercially available primary human endothelial cells and pericytes, does not require microfluidic perfusion, and allows simultaneous observation of cell morphologies and interactions over time in 60 samples, enabling high-throughput analysis of multiple culture conditions with replicates. ResultsImage analysis pipelines were created to quantify microvascular adaptations, including one to measure colocalization between endothelial cells and pericytes, capturing dynamic coupling and uncoupling associated with capillary stability, angiogenesis, and regression. We validated the ability of our co-culture system to reproducibly represent the effects of fibrotic and angiogenic activation signals, including an FDA-approved drug, on endothelial cells, pericytes, and their coupling. ConclusionThis novel, high-throughput microvascular screening assay enables quantification of microvascular dynamics in response to disease-relevant stimuli and therapeutics in a repeatable, real-time manner.

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Curved by Design: Applying Microfluidic Principles for Nonplanar and Planar Suspended Tissue Patterning to the Development of Bladder Models with Tunable Mechanics

Whitten, J. M.; Lin, A.; Bouker, E. E.; Viswanathan, A. R.; Berthier, J.; Su, X.; Schumacher, E. A.; Berthier, E.; Theberge, A. B.; Haack, A. J.; Chandru, M. R.

2026-09-18 bioengineering 10.64898/2026.09.11.751043 medRxiv
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Cells in vivo exist in a complex environment where they receive chemical and physical cues from neighboring cells and the extracellular matrix. Suspended, three dimensional (3D) cell culture enables the study of mechanical signals in a controlled in vitro setting where cells can exert forces on the extracellular matrix, and mechanical stimulation can be externally applied. In addition to mechanical cues, tissues in vivo also exhibit spatial heterogeneity and nonplanar topography. To facilitate the development of suspended 3D cell culture models with both spatial and geometric complexity, we previously introduced Suspended Tissue Engineering with Assemblable Microfluidics (STEAM). STEAM is an accessible, modular platform that utilizes fluidic patterning to create multiregional planar and nonplanar suspended cell-embedded 3D tissues. Herein, we further characterize the STEAM dome platform by developing a theoretical model that explains some experimental considerations necessary for successful two-region patterning in a nonplanar construct. We highlight a brief biological application of the planar and nonplanar STEAM platforms by creating simple but physiologically relevant model systems for the bladder, a sphere-like organ with concentric tissue layers and a central lumen that dynamically expands and contracts during filling and voiding. We demonstrate that the suspended configuration of the planar bladder smooth muscle tissue patch induces inherent tension, which can be increased by further straining the tissues; both result in muscle cell alignment along the axis of stretch as shown by a clear peak at 90 degrees in a radial sum analysis of the two dimensional Fast Fourier Transform of images with fluorescent signal from myosin heavy chain 11 immunostaining. Further, we utilize the nonplanar STEAM platform with a human urothelial cell line (HBLAK) and primary bladder smooth muscle cells (HBdSMC) to create a bladder wall model, resulting in a domed, bilayered tissue. STEAM integrates patterning precision, mechanical functionality, and customizability to actualize an accessible and low cost alternative to generate spatially and geometrically complex suspended tissues.

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Cell-specific heteroclinic orbits govern interaction dynamics in inertial microfluidics for circulating tumour cell separation

Hay, R.; Ghera, C.; Zhou, J.; Papautsky, I.; Krueger, T.; Owen, B.

2026-09-17 bioengineering 10.64898/2026.09.15.751739 medRxiv
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Cancer survival rates increase with earlier diagnosis. However, many cancers are diagnosed only after symptoms develop, in the later stages of cancer progression. We need a diagnostic tool that can detect cancer earlier. Circulating tumour cells (CTCs) are cells that detach from the main tumour and can enter the bloodstream. The capture and analysis of CTCs can provide an early indicator of cancer. However, rarity of CTCs in blood makes their efficient capture challenging. Inertial microfluidics can be utilised for a label-free separation of CTCs from white blood cells (WBCs) by manipulating cells in the microchannel based on cell properties, achieving good separation performance. Inertial microfluidic devices mainly rely on size-based separation. However, residual WBC carryover limits complete separation. Here, we show that cell mechanical heterogeneity plays a large role in the separation process and should be considered in the design of these devices. We simulate the migration dynamics of CTCs and WBCs in a straight microchannel using a 3D lattice-Boltzmann-immersed-boundary-finite-element solver. Our results demonstrate that WBC migration behaviour changes depending on the deformability of a CTC. The size and deformability of the cells have been shown to determine the cell-specific heteroclinic orbits leading to different interaction types, these interactions alter WBC migration resulting in more/less WBC carryover. This work highlights that both cell-specific heteroclinic orbits and single cell migration rates should be considered in the design of inertial microfluidics for separation.

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Automated High-Throughput Microfluidic Platform for Cell Pairing and Chemical Fusion

Silvestre de Leon, R.; Gonzalez Gonzalez, E.; Rodriguez Moncayo, R.; Cruz Cardenas, J. A.; Martinez Chapa, S.; Voldman, J.; Mahdi Aeinehvand, M.

2026-10-06 bioengineering 10.64898/2026.10.02.756271 medRxiv
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Cell fusion enables cell-based applications, yet systematic optimization remains constrained by low throughput (microfluidic devices) and manual operation (bulk protocols). Here, an automated microfluidic platform is presented for cell pairing and chemical fusion at a statistically relevant scale. High throughput is achieved by arranging ~350,000 deformability-based cell traps as concentric circular arrays in a radial chip. Using tumor and dendritic cells as a model for cancer vaccine, the device reproducibly co-occupies ~75% of traps (~250,000) of which ~140,000 hold exactly one cell of each type. This exceeds the yield of previously reported in hydrodynamic pairing arrays by more than an order of magnitude. A concentration step-up-and-down PEG profile yielded a fusion efficiency of ~20% (range 17.7-23.4%, n =3) at viability above 90% that results in producing at least ~50,000 hybrids per chip. This efficiency is comparable to that reported for PEG-based fusion in small-scale microfluidic devices but obtained at higher throughput and approximately four-fold higher than the conventional benchtop protocol. Fusion efficiencies were quantified by image analysis and validated by flow cytometry. By combining automation, large-area circular trap arrays and reagent control, the platform is useful for data-rich optimization of cell engineering processes previously constrained by limited microfluidic throughput.